Index B | C | D | E | F | G | H | I | J | L | M | N | S | T | W B binding_indices (moffragmentor.fragmentor.nodelocator.NodelocationResult attribute) branching_indices (moffragmentor.fragmentor.nodelocator.NodelocationResult attribute) bridges (moffragmentor.mof.MOF property) bridges_across_cell() (in module moffragmentor.fragmentor.filter) building_block_composition (moffragmentor.sbu.linkercollection.LinkerCollection property) C composition (moffragmentor.molecule.nonsbumoleculecollection.NonSbuMoleculeCollection property) connecting_paths (moffragmentor.fragmentor.nodelocator.NodelocationResult attribute) create_linker_collection() (in module moffragmentor.fragmentor.linkerlocator) D dump() (moffragmentor.mof.MOF method) E enable_logging() (in module moffragmentor.utils) F find_node_clusters() (in module moffragmentor.fragmentor.nodelocator) frac_coords (moffragmentor.mof.MOF property) fragment() (moffragmentor.mof.MOF method) from_cif() (moffragmentor.mof.MOF class method) from_mof_and_indices() (moffragmentor.sbu.node.Node class method) from_structure_graph_and_indices() (moffragmentor.molecule.nonsbumolecule.NonSbuMolecule class method) G get_all_bound_solvent_molecules() (in module moffragmentor.fragmentor.solventlocator) get_branch_points() (in module moffragmentor.fragmentor.branching_points) get_floating_solvent_molecules() (in module moffragmentor.fragmentor.solventlocator) get_neighbor_indices() (moffragmentor.mof.MOF method) (moffragmentor.sbu.sbu.SBU method) get_sub_structure() (in module moffragmentor.utils) get_symbol_of_site() (moffragmentor.mof.MOF method) H hash (moffragmentor.sbu.sbu.SBU property) I in_hull() (in module moffragmentor.fragmentor.filter) is_tool() (in module moffragmentor.utils) IStructure (class in moffragmentor.utils) J JavaNotFoundError L Linker (class in moffragmentor.sbu.linker) LinkerCollection (class in moffragmentor.sbu.linkercollection) M mcs_rank() (in module moffragmentor.utils.mol_compare) module moffragmentor.cli moffragmentor.fragmentor.branching_points moffragmentor.fragmentor.filter moffragmentor.fragmentor.linkerlocator moffragmentor.fragmentor.molfromgraph moffragmentor.fragmentor.nodelocator moffragmentor.fragmentor.solventlocator moffragmentor.fragmentor.splitter moffragmentor.mof moffragmentor.molecule.nonsbumolecule moffragmentor.molecule.nonsbumoleculecollection moffragmentor.sbu.linker moffragmentor.sbu.linkercollection moffragmentor.sbu.node moffragmentor.sbu.nodecollection moffragmentor.sbu.sbu moffragmentor.sbu.sbucollection moffragmentor.utils moffragmentor.utils.errors moffragmentor.utils.mol_compare moffragmentor.utils.periodic_graph moffragmentor.utils.systre MOF (class in moffragmentor.mof) moffragmentor.cli module moffragmentor.fragmentor.branching_points module moffragmentor.fragmentor.filter module moffragmentor.fragmentor.linkerlocator module moffragmentor.fragmentor.molfromgraph module moffragmentor.fragmentor.nodelocator module moffragmentor.fragmentor.solventlocator module moffragmentor.fragmentor.splitter module moffragmentor.mof module moffragmentor.molecule.nonsbumolecule module moffragmentor.molecule.nonsbumoleculecollection module moffragmentor.sbu.linker module moffragmentor.sbu.linkercollection module moffragmentor.sbu.node module moffragmentor.sbu.nodecollection module moffragmentor.sbu.sbu module moffragmentor.sbu.sbucollection module moffragmentor.utils module moffragmentor.utils.errors module moffragmentor.utils.mol_compare module moffragmentor.utils.periodic_graph module moffragmentor.utils.systre module N Node (class in moffragmentor.sbu.node) NodeCollection (class in moffragmentor.sbu.nodecollection) NodelocationResult (class in moffragmentor.fragmentor.nodelocator) nodes (moffragmentor.fragmentor.nodelocator.NodelocationResult attribute) NoMetalError NonSbuMolecule (class in moffragmentor.molecule.nonsbumolecule) NonSbuMoleculeCollection (class in moffragmentor.molecule.nonsbumoleculecollection) nx_graph (moffragmentor.mof.MOF property) S SBU (class in moffragmentor.sbu.sbu) SBUCollection (class in moffragmentor.sbu.sbucollection) search_pubchem() (moffragmentor.sbu.sbu.SBU method) show_adjacency_matrix() (moffragmentor.mof.MOF method) show_molecule() (moffragmentor.molecule.nonsbumolecule.NonSbuMolecule method) show_structure() (moffragmentor.mof.MOF method) smiles (moffragmentor.sbu.sbu.SBU property) (moffragmentor.sbu.sbucollection.SBUCollection property) T tanimoto_rank() (in module moffragmentor.utils.mol_compare) terminal_indices (moffragmentor.mof.MOF property) to_terminal_from_branching (moffragmentor.fragmentor.nodelocator.NodelocationResult attribute) W wrap_molecule() (in module moffragmentor.fragmentor.molfromgraph) write_cif() (moffragmentor.mof.MOF method)